IL_8XU8_081
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_081 not in the Motif Atlas
- Homologous match to IL_8C3A_475
- Geometric discrepancy: 0.119
- The information below is about IL_8C3A_475
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.13
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8XU8|1|2|C|1653
8XU8|1|2|G|1654
8XU8|1|2|A|1655
8XU8|1|2|U|1656
*
8XU8|1|2|A|1744
8XU8|1|2|G|1745
8XU8|1|2|A|1746
8XU8|1|2|G|1747
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain X
- Large ribosomal subunit protein uL14A
- Chain p
- Large ribosomal subunit protein eL41A
Coloring options: