IL_8XU8_109
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUUUG*CAUAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_109 not in the Motif Atlas
- Homologous match to IL_8P9A_250
- Geometric discrepancy: 0.1694
- The information below is about IL_8P9A_250
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87030.1
- Basepair signature
- cWW-cWW-cWW-L-R
- Number of instances in this motif group
- 3
Unit IDs
8XU8|1|A|G|680
8XU8|1|A|U|681
8XU8|1|A|U|682
8XU8|1|A|U|683
8XU8|1|A|G|684
*
8XU8|1|A|C|696
8XU8|1|A|A|697
8XU8|1|A|U|698
8XU8|1|A|A|699
8XU8|1|A|C|700
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4A
- Chain N
- Large ribosomal subunit protein eL13A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain c
- Large ribosomal subunit protein uL15
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