IL_8XU8_110
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGG*UGCAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_110 not in the Motif Atlas
- Homologous match to IL_8P9A_251
- Geometric discrepancy: 0.161
- The information below is about IL_8P9A_251
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- No text annotation
- Motif group
- IL_45790.1
- Basepair signature
- cWW-tSH-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
8XU8|1|A|G|725
8XU8|1|A|G|726
8XU8|1|A|G|727
8XU8|1|A|G|728
*
8XU8|1|A|U|741
8XU8|1|A|G|742
8XU8|1|A|C|743
8XU8|1|A|A|744
8XU8|1|A|C|745
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain S
- Large ribosomal subunit protein eL18A
- Chain d
- Large ribosomal subunit protein eL29
Coloring options: