IL_8XU8_129

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_129 not in the Motif Atlas

Homologous match to IL_8C3A_045

Geometric discrepancy: 0.1662

The information below is about IL_8C3A_045

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8XU8|1|A|A|1009
8XU8|1|A|G|1010
8XU8|1|A|A|1011
*
8XU8|1|A|U|1039
8XU8|1|A|A|1040
8XU8|1|A|U|1041

Current chains

Chain A

25S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL18

Chain L

Large ribosomal subunit protein uL16