IL_8XU8_147

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

8XU8|1|A|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_147 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.2079

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8XU8|1|A|U|1501
8XU8|1|A|C|1502
8XU8|1|A|A|1503
8XU8|1|A|A|1504
8XU8|1|A|C|1505
*
8XU8|1|A|G|1513
8XU8|1|A|G|1514
8XU8|1|A|A|1515

Current chains

Chain A

25S rRNA

Nearby chains

Chain R

Large ribosomal subunit protein uL22A

Chain T

Large ribosomal subunit protein eL19A

Chain n

Large ribosomal subunit protein eL39