IL_8XU8_149

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCC*GGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_149 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3843

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8XU8|1|A|G|1561
8XU8|1|A|C|1562
8XU8|1|A|C|1563
*
8XU8|1|A|G|1576
8XU8|1|A|G|1577
8XU8|1|A|C|1578
8XU8|1|A|C|1579

Current chains

Chain A

25S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2A

Chain J

Large ribosomal subunit protein eL8A

Chain Z

Large ribosomal subunit protein uL23