IL_8XU8_153
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGAAU*AGGAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_153 not in the Motif Atlas
- Homologous match to IL_8P9A_295
- Geometric discrepancy: 0.1718
- The information below is about IL_8P9A_295
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.1
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
8XU8|1|A|U|1645
8XU8|1|A|G|1646
8XU8|1|A|A|1647
8XU8|1|A|A|1648
8XU8|1|A|U|1649
*
8XU8|1|A|A|1806
8XU8|1|A|G|1807
8XU8|1|A|G|1808
8XU8|1|A|A|1809
8XU8|1|A|A|1810
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2A
- Chain b
- Large ribosomal subunit protein eL27A
- Chain i
- Large ribosomal subunit protein eL34A
Coloring options: