IL_8XU8_169
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 8XU8|1|A|U|2159, 8XU8|1|A|U|2175, 8XU8|1|A|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_169 not in the Motif Atlas
- Homologous match to IL_8P9A_311
- Geometric discrepancy: 0.1397
- The information below is about IL_8P9A_311
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14684.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8XU8|1|A|C|2156
8XU8|1|A|G|2157
8XU8|1|A|A|2158
8XU8|1|A|U|2159
8XU8|1|A|G|2160
8XU8|1|A|G|2161
*
8XU8|1|A|U|2173
8XU8|1|A|G|2174
8XU8|1|A|U|2175
8XU8|1|A|U|2176
8XU8|1|A|G|2177
8XU8|1|A|A|2178
8XU8|1|A|C|2179
8XU8|1|A|G|2180
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain D
- Large ribosomal subunit protein uL2A
- Chain r
- Large ribosomal subunit protein eL43A
Coloring options: