IL_8XU8_172

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

8XU8|1|A|U|2205, 8XU8|1|A|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XU8|1|A|C|2204
8XU8|1|A|U|2205
8XU8|1|A|G|2206
8XU8|1|A|A|2207
8XU8|1|A|A|2208
8XU8|1|A|U|2209
8XU8|1|A|G|2210
*
8XU8|1|A|C|2235
8XU8|1|A|G|2236
8XU8|1|A|C|2237
8XU8|1|A|G|2238

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain D

Large ribosomal subunit protein uL2A

Chain SQ

Small ribosomal subunit protein eS1A