IL_8XU8_193
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCAAG*CGACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_193 not in the Motif Atlas
- Homologous match to IL_8C3A_114
- Geometric discrepancy: 0.1883
- The information below is about IL_8C3A_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8XU8|1|A|U|2835
8XU8|1|A|C|2836
8XU8|1|A|A|2837
8XU8|1|A|A|2838
8XU8|1|A|G|2839
*
8XU8|1|A|C|2849
8XU8|1|A|G|2850
8XU8|1|A|A|2851
8XU8|1|A|C|2852
8XU8|1|A|A|2853
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein uL16
- Chain o
- Large ribosomal subunit protein eL40A
- Chain s
- Transfer RNA; tRNA
Coloring options: