IL_8XU8_224

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

8XU8|1|B|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_224 not in the Motif Atlas

Homologous match to IL_8C3A_143

Geometric discrepancy: 0.1287

The information below is about IL_8C3A_143

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8XU8|1|B|C|15
8XU8|1|B|U|16
*
8XU8|1|B|A|63
8XU8|1|B|A|64
8XU8|1|B|G|65

Current chains

Chain B

5S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain G

Large ribosomal subunit protein uL18

Chain L

Large ribosomal subunit protein uL16

Chain M

Large ribosomal subunit protein uL5B