IL_8XU8_228
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 8XU8|1|B|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_228 not in the Motif Atlas
- Homologous match to IL_8P9A_369
- Geometric discrepancy: 0.1666
- The information below is about IL_8P9A_369
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.1
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
8XU8|1|B|A|72
8XU8|1|B|C|73
8XU8|1|B|C|74
8XU8|1|B|G|75
8XU8|1|B|A|76
8XU8|1|B|G|77
8XU8|1|B|U|78
8XU8|1|B|A|79
8XU8|1|B|G|80
*
8XU8|1|B|C|100
8XU8|1|B|G|101
8XU8|1|B|A|102
8XU8|1|B|A|103
8XU8|1|B|A|104
8XU8|1|B|C|105
8XU8|1|B|U|106
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- Large ribosomal subunit protein uL30A
- Chain L
- Large ribosomal subunit protein uL16
- Chain U
- Large ribosomal subunit protein eL20A
- Chain V
- Large ribosomal subunit protein eL21A
Coloring options: