IL_8XXL_004

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

8XXL|1|S2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXL_004 not in the Motif Atlas

Homologous match to IL_8C3A_395

Geometric discrepancy: 0.0802

The information below is about IL_8C3A_395

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80458.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8XXL|1|S2|G|41
8XXL|1|S2|A|42
8XXL|1|S2|U|43
8XXL|1|S2|U|44
8XXL|1|S2|A|45
8XXL|1|S2|A|46
8XXL|1|S2|G|47
*
8XXL|1|S2|C|479
8XXL|1|S2|G|480
8XXL|1|S2|C|481

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23