IL_8XXL_031

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

8XXL|1|S2|A|536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXL_031 not in the Motif Atlas

Geometric match to IL_5WTK_001

Geometric discrepancy: 0.1237

The information below is about IL_5WTK_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8XXL|1|S2|G|535
8XXL|1|S2|A|536
8XXL|1|S2|C|537
*
8XXL|1|S2|G|546
8XXL|1|S2|G|547
8XXL|1|S2|C|548

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

40S ribosomal protein S30