IL_8XXL_056
3D structure
- PDB id
- 8XXL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8XXL|1|S2|C|1153, 8XXL|1|S2|U|1155, 8XXL|1|S2|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XXL_056 not in the Motif Atlas
- Homologous match to IL_8C3A_443
- Geometric discrepancy: 0.1002
- The information below is about IL_8C3A_443
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47729.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8XXL|1|S2|C|1091
8XXL|1|S2|G|1092
8XXL|1|S2|A|1093
*
8XXL|1|S2|U|1152
8XXL|1|S2|C|1153
8XXL|1|S2|U|1154
8XXL|1|S2|U|1155
8XXL|1|S2|U|1156
8XXL|1|S2|G|1157
8XXL|1|S2|G|1158
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sb
- 40S ribosomal protein S27
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