IL_8XXL_078

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

8XXL|1|S2|C|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXL_078 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2052

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8XXL|1|S2|U|1408
8XXL|1|S2|A|1409
*
8XXL|1|S2|U|1432
8XXL|1|S2|C|1433
8XXL|1|S2|C|1434
8XXL|1|S2|C|1435
8XXL|1|S2|C|1436
8XXL|1|S2|C|1437
8XXL|1|S2|A|1438

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20