IL_8XXL_081

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

8XXL|1|S2|C|1553, 8XXL|1|S2|A|1580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XXL|1|S2|G|1550
8XXL|1|S2|U|1551
8XXL|1|S2|G|1552
8XXL|1|S2|C|1553
8XXL|1|S2|C|1554
8XXL|1|S2|U|1555
8XXL|1|S2|A|1556
8XXL|1|S2|C|1557
8XXL|1|S2|C|1558
*
8XXL|1|S2|G|1577
8XXL|1|S2|U|1578
8XXL|1|S2|A|1579
8XXL|1|S2|A|1580
8XXL|1|S2|C|1581
8XXL|1|S2|C|1582

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SK

40S ribosomal protein S10

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29