IL_8XXL_088

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXL_088 not in the Motif Atlas

Homologous match to IL_4V88_467

Geometric discrepancy: 0.127

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8XXL|1|S2|U|1714
8XXL|1|S2|A|1715
8XXL|1|S2|C|1716
*
8XXL|1|S2|G|1817
8XXL|1|S2|A|1818
8XXL|1|S2|A|1819

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23