IL_8XXL_090

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGG*CUA

Length

7 nucleotides

Bulged bases

8XXL|1|S2|U|1721, 8XXL|1|S2|U|1812

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XXL|1|S2|U|1720
8XXL|1|S2|U|1721
8XXL|1|S2|G|1722
8XXL|1|S2|G|1723
*
8XXL|1|S2|C|1811
8XXL|1|S2|U|1812
8XXL|1|S2|A|1813

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23