IL_8XXL_096

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCCGC*GCGGAGCG

Length

14 nucleotides

Bulged bases

8XXL|1|S2|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XXL|1|S2|C|1750
8XXL|1|S2|C|1751
8XXL|1|S2|C|1752
8XXL|1|S2|C|1753
8XXL|1|S2|G|1754
8XXL|1|S2|C|1755
*
8XXL|1|S2|G|1777
8XXL|1|S2|C|1778
8XXL|1|S2|G|1779
8XXL|1|S2|G|1780
8XXL|1|S2|A|1781
8XXL|1|S2|G|1782
8XXL|1|S2|C|1783
8XXL|1|S2|G|1784

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6