IL_8XXL_103

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUG*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXL_103 not in the Motif Atlas

Geometric match to IL_1Z7F_006

Geometric discrepancy: 0.2601

The information below is about IL_1Z7F_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8XXL|1|S2|A|1724
8XXL|1|S2|U|1725
8XXL|1|S2|G|1726
*
8XXL|1|S2|U|1808
8XXL|1|S2|A|1809
8XXL|1|S2|U|1810

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23