IL_8XXL_105

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACAGGAUUG*CUCGAUU

Length

16 nucleotides

Bulged bases

8XXL|1|S2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XXL|1|S2|A|1282
8XXL|1|S2|C|1283
8XXL|1|S2|A|1284
8XXL|1|S2|G|1285
8XXL|1|S2|G|1286
8XXL|1|S2|A|1287
8XXL|1|S2|U|1288
8XXL|1|S2|U|1289
8XXL|1|S2|G|1290
*
8XXL|1|S2|C|1309
8XXL|1|S2|U|1310
8XXL|1|S2|C|1311
8XXL|1|S2|G|1312
8XXL|1|S2|A|1313
8XXL|1|S2|U|1314
8XXL|1|S2|U|1315

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain SM

40S ribosomal protein S12

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin-40S ribosomal protein S27a