IL_8XXM_050

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

8XXM|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXM_050 not in the Motif Atlas

Geometric match to IL_3NDB_005

Geometric discrepancy: 0.2463

The information below is about IL_3NDB_005

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8XXM|1|S2|G|925
8XXM|1|S2|A|926
*
8XXM|1|S2|U|1015
8XXM|1|S2|U|1016
8XXM|1|S2|U|1017

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27