IL_8XXM_063

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

8XXM|1|S2|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXM_063 not in the Motif Atlas

Homologous match to IL_4V88_442

Geometric discrepancy: 0.1265

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8XXM|1|S2|G|1206
8XXM|1|S2|G|1207
8XXM|1|S2|A|1208
*
8XXM|1|S2|U|1691
8XXM|1|S2|U|1692

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Sa

40S ribosomal protein S26