IL_8XXM_090

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXM_090 not in the Motif Atlas

Geometric match to IL_4XWF_001

Geometric discrepancy: 0.2008

The information below is about IL_4XWF_001

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8XXM|1|S2|C|1717
8XXM|1|S2|G|1718
8XXM|1|S2|A|1719
8XXM|1|S2|U|1720
*
8XXM|1|S2|A|1813
8XXM|1|S2|G|1814
8XXM|1|S2|A|1815
8XXM|1|S2|G|1816

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41