IL_8XXN_013

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCACUU*AUGCCGAC*AUGCCGAC

Length

23 nucleotides

Bulged bases

8XXN|1|S2|C|139, 8XXN|1|S2|C|142, 8XXN|1|S2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XXN|1|S2|G|130
8XXN|1|S2|C|139
8XXN|1|S2|C|140
8XXN|1|S2|A|141
8XXN|1|S2|C|142
8XXN|1|S2|U|143
8XXN|1|S2|U|144
*
8XXN|1|S2|A|175
8XXN|1|S2|U|176
8XXN|1|S2|G|177
8XXN|1|S2|C|178
8XXN|1|S2|C|179
8XXN|1|S2|G|180
8XXN|1|S2|A|181
8XXN|1|S2|C|182
*
8XXN|1|S2|A|175
8XXN|1|S2|U|176
8XXN|1|S2|G|177
8XXN|1|S2|C|178
8XXN|1|S2|C|179
8XXN|1|S2|G|180
8XXN|1|S2|A|181
8XXN|1|S2|C|182

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6