IL_8XXN_022

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8XXN|1|S2|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXN_022 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2998

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8XXN|1|S2|U|366
8XXN|1|S2|U|367
8XXN|1|S2|U|368
8XXN|1|S2|C|369
8XXN|1|S2|G|370
8XXN|1|S2|A|371
*
8XXN|1|S2|U|393
8XXN|1|S2|G|394

Current chains

Chain S2

18S rRNA

Nearby chains

Chain 3C

Eukaryotic translation initiation factor 3 subunit C

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11