IL_8XXN_029
3D structure
- PDB id
- 8XXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 43S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAU*AAUUG
- Length
- 9 nucleotides
- Bulged bases
- 8XXN|1|S2|U|556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XXN_029 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.2482
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
8XXN|1|S2|C|527
8XXN|1|S2|A|528
8XXN|1|S2|A|529
8XXN|1|S2|U|530
*
8XXN|1|S2|A|554
8XXN|1|S2|A|555
8XXN|1|S2|U|556
8XXN|1|S2|U|557
8XXN|1|S2|G|558
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain 3B
- Eukaryotic translation initiation factor 3 subunit B
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- 40S ribosomal protein S30
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