IL_8XXN_085

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8XXN|1|S2|C|1701, 8XXN|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXN_085 not in the Motif Atlas

Homologous match to IL_8C3A_470

Geometric discrepancy: 0.0842

The information below is about IL_8C3A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8XXN|1|S2|C|1700
8XXN|1|S2|C|1701
8XXN|1|S2|G|1702
*
8XXN|1|S2|C|1833
8XXN|1|S2|A|1834
8XXN|1|S2|A|1835
8XXN|1|S2|G|1836

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CD

Programmed cell death protein 4

Chain Sa

40S ribosomal protein S26