IL_8XXN_088

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

8XXN|1|S2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XXN|1|S2|C|1708
8XXN|1|S2|G|1709
8XXN|1|S2|C|1710
8XXN|1|S2|U|1711
*
8XXN|1|S2|A|1822
8XXN|1|S2|A|1823
8XXN|1|S2|A|1824
8XXN|1|S2|A|1825
8XXN|1|S2|G|1826

Current chains

Chain S2

18S rRNA

Nearby chains

Chain C1

Eukaryotic translation initiation factor 1

Chain CD

Programmed cell death protein 4

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23