IL_8XXN_091

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGG*UCUA

Length

8 nucleotides

Bulged bases

8XXN|1|S2|U|1721, 8XXN|1|S2|U|1812

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXN_091 not in the Motif Atlas

Geometric match to IL_406D_002

Geometric discrepancy: 0.3644

The information below is about IL_406D_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8XXN|1|S2|U|1720
8XXN|1|S2|U|1721
8XXN|1|S2|G|1722
8XXN|1|S2|G|1723
*
8XXN|1|S2|U|1810
8XXN|1|S2|C|1811
8XXN|1|S2|U|1812
8XXN|1|S2|A|1813

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23