IL_8XXN_093

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUU*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXN_093 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.3298

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8XXN|1|S2|G|1727
8XXN|1|S2|U|1728
8XXN|1|S2|U|1729
*
8XXN|1|S2|G|1805
8XXN|1|S2|A|1806
8XXN|1|S2|C|1807

Current chains

Chain S2

18S rRNA

Nearby chains

Chain 3C

Eukaryotic translation initiation factor 3 subunit C

Chain SI

40S ribosomal protein S8