IL_8XXN_094

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXN_094 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.1951

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8XXN|1|S2|U|1729
8XXN|1|S2|U|1730
8XXN|1|S2|A|1731
*
8XXN|1|S2|U|1803
8XXN|1|S2|U|1804
8XXN|1|S2|G|1805

Current chains

Chain S2

18S rRNA

Nearby chains

Chain 3C

Eukaryotic translation initiation factor 3 subunit C

Chain SI

40S ribosomal protein S8