IL_8XXN_100

3D structure

PDB id

8XXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 43S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXN_100 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2399

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

8XXN|1|S2|G|534
8XXN|1|S2|G|535
*
8XXN|1|S2|C|548
8XXN|1|S2|C|549
8XXN|1|S2|C|550

Current chains

Chain S2

18S rRNA

Nearby chains

Chain 3B

Eukaryotic translation initiation factor 3 subunit B

Chain SJ

40S ribosomal protein S9

Chain Se

40S ribosomal protein S30