IL_8XZ3_007
3D structure
- PDB id
- 8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAAGUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XZ3_007 not in the Motif Atlas
- Geometric match to IL_4V9F_006
- Geometric discrepancy: 0.1115
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
8XZ3|1|A|G|187
8XZ3|1|A|G|188
8XZ3|1|A|A|189
8XZ3|1|A|A|190
8XZ3|1|A|G|191
8XZ3|1|A|U|192
8XZ3|1|A|G|193
*
8XZ3|1|A|C|200
8XZ3|1|A|U|201
8XZ3|1|A|C|202
8XZ3|1|A|A|203
8XZ3|1|A|G|204
8XZ3|1|A|U|205
8XZ3|1|A|A|206
8XZ3|1|A|C|207
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain M
- Large ribosomal subunit protein uL15
- Chain Y
- Large ribosomal subunit protein bL28
- Chain e
- Large ribosomal subunit protein bL35
Coloring options: