IL_8XZ3_035

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_035 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2988

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8XZ3|1|A|C|991
8XZ3|1|A|C|992
8XZ3|1|A|G|993
8XZ3|1|A|A|994
8XZ3|1|A|U|995
8XZ3|1|A|G|996
*
8XZ3|1|A|C|1012
8XZ3|1|A|U|1013
8XZ3|1|A|G|1014
8XZ3|1|A|A|1015
8XZ3|1|A|C|1016
8XZ3|1|A|G|1017

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

Large ribosomal subunit protein bL25