IL_8XZ3_049

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

8XZ3|1|A|G|1363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_049 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.1115

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8XZ3|1|A|C|1311
8XZ3|1|A|G|1312
8XZ3|1|A|U|1313
*
8XZ3|1|A|A|1362
8XZ3|1|A|G|1363
8XZ3|1|A|U|1364
8XZ3|1|A|G|1365

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain M

Large ribosomal subunit protein uL15

Chain R

Large ribosomal subunit protein bL20