IL_8XZ3_056

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_056 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1091

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8XZ3|1|A|C|1472
8XZ3|1|A|G|1473
8XZ3|1|A|A|1474
8XZ3|1|A|G|1475
8XZ3|1|A|G|1476
*
8XZ3|1|A|C|1485
8XZ3|1|A|G|1486
8XZ3|1|A|U|1487
8XZ3|1|A|A|1488
8XZ3|1|A|G|1489

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain d

Large ribosomal subunit protein bL34