IL_8XZ3_084

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_084 not in the Motif Atlas

Homologous match to IL_8VTW_073

Geometric discrepancy: 0.188

The information below is about IL_8VTW_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89021.1

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8XZ3|1|A|U|2068
8XZ3|1|A|U|2069
8XZ3|1|A|A|2070
8XZ3|1|A|A|2071
8XZ3|1|A|G|2072
*
8XZ3|1|A|U|2111
8XZ3|1|A|U|2112
8XZ3|1|A|A|2113
8XZ3|1|A|A|2114
8XZ3|1|A|G|2115

Current chains

Chain A

23S rRNA

Nearby chains