IL_8XZ3_092

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAA*UGGG

Length

7 nucleotides

Bulged bases

8XZ3|1|A|G|2462

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_092 not in the Motif Atlas

Homologous match to IL_8VTW_081

Geometric discrepancy: 0.1734

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8XZ3|1|A|C|2304
8XZ3|1|A|A|2305
8XZ3|1|A|A|2306
*
8XZ3|1|A|U|2460
8XZ3|1|A|G|2461
8XZ3|1|A|G|2462
8XZ3|1|A|G|2463

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain Y

Large ribosomal subunit protein bL28