IL_8XZ3_110

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_110 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.1354

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8XZ3|1|A|A|2683
8XZ3|1|A|U|2684
8XZ3|1|A|C|2685
*
8XZ3|1|A|G|2713
8XZ3|1|A|G|2714
8XZ3|1|A|U|2715
8XZ3|1|A|U|2716
8XZ3|1|A|U|2717

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein bL37

Chain N

Large ribosomal subunit protein uL16