IL_8XZ3_114

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8XZ3|1|A|G|2800, 8XZ3|1|A|A|2801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_114 not in the Motif Atlas

Geometric match to IL_7A0S_089

Geometric discrepancy: 0.1529

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

8XZ3|1|A|C|2734
8XZ3|1|A|U|2735
8XZ3|1|A|C|2736
*
8XZ3|1|A|G|2798
8XZ3|1|A|C|2799
8XZ3|1|A|G|2800
8XZ3|1|A|A|2801
8XZ3|1|A|G|2802

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain b

Large ribosomal subunit protein bL32