IL_8XZ3_133

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGC*GUAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_133 not in the Motif Atlas

Geometric match to IL_8P9A_292

Geometric discrepancy: 0.3628

The information below is about IL_8P9A_292

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.6

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

8XZ3|1|A|C|182
8XZ3|1|A|G|183
8XZ3|1|A|C|184
*
8XZ3|1|A|G|210
8XZ3|1|A|U|211
8XZ3|1|A|A|212
8XZ3|1|A|G|213

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein bL34