IL_8XZ3_140

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAAGC*GUGAUG

Length

11 nucleotides

Bulged bases

8XZ3|1|A|U|1745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_140 not in the Motif Atlas

Homologous match to IL_4WF9_116

Geometric discrepancy: 0.2013

The information below is about IL_4WF9_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25186.4

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8XZ3|1|A|U|1689
8XZ3|1|A|A|1690
8XZ3|1|A|A|1691
8XZ3|1|A|G|1692
8XZ3|1|A|C|1693
*
8XZ3|1|A|G|1741
8XZ3|1|A|U|1742
8XZ3|1|A|G|1743
8XZ3|1|A|A|1744
8XZ3|1|A|U|1745
8XZ3|1|A|G|1746

Current chains

Chain A

23S rRNA

Nearby chains