IL_8XZ3_145

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAGA*UCGUUGUUGAAAUACC

Length

22 nucleotides

Bulged bases

8XZ3|1|A|U|2387, 8XZ3|1|A|U|2395

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_145 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.2238

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

8XZ3|1|A|G|2346
8XZ3|1|A|G|2347
8XZ3|1|A|G|2348
8XZ3|1|A|A|2349
8XZ3|1|A|G|2350
8XZ3|1|A|A|2351
*
8XZ3|1|A|U|2383
8XZ3|1|A|C|2384
8XZ3|1|A|G|2385
8XZ3|1|A|U|2386
8XZ3|1|A|U|2387
8XZ3|1|A|G|2388
8XZ3|1|A|U|2389
8XZ3|1|A|U|2390
8XZ3|1|A|G|2391
8XZ3|1|A|A|2392
8XZ3|1|A|A|2393
8XZ3|1|A|A|2394
8XZ3|1|A|U|2395
8XZ3|1|A|A|2396
8XZ3|1|A|C|2397
8XZ3|1|A|C|2398

Current chains

Chain A

23S rRNA

Nearby chains