IL_8XZ3_153

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8XZ3|1|A|U|2355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XZ3_153 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.2414

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8XZ3|1|A|C|2352
8XZ3|1|A|U|2353
8XZ3|1|A|G|2354
8XZ3|1|A|U|2355
8XZ3|1|A|G|2356
8XZ3|1|A|A|2357
8XZ3|1|A|A|2358
8XZ3|1|A|G|2359
*
8XZ3|1|A|U|2378
8XZ3|1|A|G|2379
8XZ3|1|A|G|2380
8XZ3|1|A|A|2381
8XZ3|1|A|G|2382

Current chains

Chain A

23S rRNA

Nearby chains