IL_8Y0U_007

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

8Y0U|1|C1|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_007 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.1322

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8Y0U|1|C1|A|123
8Y0U|1|C1|U|124
*
8Y0U|1|C1|A|144
8Y0U|1|C1|G|145
8Y0U|1|C1|U|146
8Y0U|1|C1|U|147
8Y0U|1|C1|G|148
8Y0U|1|C1|U|149

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

Large ribosomal subunit protein eL8A

Chain LN

Large ribosomal subunit protein eL15A