IL_8Y0U_010

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

8Y0U|1|C1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_010 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.2952

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

8Y0U|1|C1|U|169
8Y0U|1|C1|G|170
*
8Y0U|1|C1|U|248
8Y0U|1|C1|U|249
8Y0U|1|C1|U|250
8Y0U|1|C1|G|251
8Y0U|1|C1|U|252
8Y0U|1|C1|A|253

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LG

Large ribosomal subunit protein eL8A

Chain LL

Large ribosomal subunit protein eL13A

Chain Lh

Large ribosomal subunit protein uL29A