IL_8Y0U_011

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_011 not in the Motif Atlas

Geometric match to IL_5TBW_501

Geometric discrepancy: 0.2893

The information below is about IL_5TBW_501

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8Y0U|1|C1|U|177
8Y0U|1|C1|U|178
*
8Y0U|1|C1|A|238
8Y0U|1|C1|G|239
8Y0U|1|C1|U|240
8Y0U|1|C1|G|241

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13A

Chain Lh

Large ribosomal subunit protein uL29A

Chain Lj

Large ribosomal subunit protein eL37A