IL_8Y0U_015

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GUGAAAU*ACGGAUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_015 not in the Motif Atlas

Homologous match to IL_8C3A_016

Geometric discrepancy: 0.1327

The information below is about IL_8C3A_016

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8Y0U|1|C1|G|404
8Y0U|1|C1|U|405
8Y0U|1|C1|G|406
8Y0U|1|C1|A|407
8Y0U|1|C1|A|408
8Y0U|1|C1|A|409
8Y0U|1|C1|U|410
*
8Y0U|1|C3|A|13
8Y0U|1|C3|C|14
8Y0U|1|C3|G|15
8Y0U|1|C3|G|16
8Y0U|1|C3|A|17
8Y0U|1|C3|U|18
8Y0U|1|C3|C|19

Current chains

Chain C1

25S rRNA

Chain C3

5.8S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4A

Chain LP

Large ribosomal subunit protein uL22A

Chain Le

Large ribosomal subunit protein eL32